Living Atlases

An open community created around the Atlas of Living Australia platform.

Red Kangaroo, John Sullivan, some rights reserved (CC BY-NC) via iNaturalist.org

News

Remote support sessions to help Living Atlas developers bootstrapping and launching their new national or thematic data portal.

One of the feedback that we get from the LA community is to improve and simplify the implementation of a new LA data portal. To achieve this, Vicente Ruiz Jurado, technical coordinator of the LA community, put in place a procedure based on remote sessions to bootstrap and/or launch a new LA instance within an institution.

It will help newcomers to have an overview of the LA modules, but it will also support developers who want to install new modules on their platform or launch their data portal in production.

The sessions will be prepared and guided remotely by Vicente in coordination with the institution developers. The remote session will be divided typically in two half-days or more depending on the node requirements.

We propose two options:

  • the deployment of a demo with several VMs. It will be helpful for newcomers or participants that need a demo data portal to show to their institution's decision-makers or to evaluate their future hardware or software requirements. The demo VMs, hosted by the GBIF Spain, will be kept for a few weeks after the session (depending on the other nodes necessities for similar help);
  • the guidance of participants during the first deployment in their real production machines.

During the sessions, the participants and Vicente will use the ala-install ansible repository with the help of the Living Atlas Ansible Generator.

Already 3 participants did these remote sessions for deploying their demos and/or their production nodes:

  • Biodiversity Atlas of Living Austria (Georg Neubauer);
  • Biodiversity Atlas of Living Tanzania (Finian Mwalongo, Gerald Francis or Meshack Victor);
  • The Vermont Center for Ecostudies in the US (Jason Loomis).

We encourage you to contact them through Slack to have their feedback on their remote workshops

You will find more information about the procedure in this document and the technical instructions here.

Please contact Vicente by email or via Slack for future sessions. You will find his contact information inside the procedure document.

If you have any questions or if you don’t have access to the Slack channel, please contact Vicente or Marie-Elise Lecoq.

Introduction

As GBIF nodes, one of our goals is to highlight our publishers and their data. To achieve this, the Atlas of Living Australia (ALA) developed a huge open source platform with several modules re-usable by other organizations. Since 2013, the community around this tool has organized technical workshops to present ALA modules to other institutions that wanted to implement it, to improve already existing national data portals and to learn from each other’s achievements.

In order to help new users but also to keep on assisting the experienced ones, we try to arrange at least one workshop per year around specific modules of the platform (e.g. species module, spatial portal, etc.). These meetings are really motivating for new users because they can actually realise that, with some developments, they will be able to have a powerful tool running. And at the same time, these training activities are also very productive for partners with ALA portals already running as they have the opportunity to share doubts and ideas, solve technical issues, get assistance from the ALA developers’ team and -in consequence - move forward on the developments of their national data portals. Furthermore, during these technical trainings, we get ideas from other projects and allow the nodes to keep on working significantly on their own.

Thanks to the previous meetings and other engagements arranged around this topic, at least 11 data portals using ALA technology have been released in production since 2014. Other are still under development (some of them are already listed on the new GBIF web page). Katia Cezón from GBIF Spain created a Carto map showing countries with ALA installation or interest in the ALA infrastructure.

On this website, you will find documentation and information about participants and the community but also ALA tools. You will be able to access the materials from past events but also news about future events and different ways to directly talk with members of the community (through HipChat or mailing list).

You will also be able to see the community in action because we are a group of developers that love to work together and improve tools to facilitate a free and open access to biodiversity data.

Past and future events

You will find here an exhaustive list of all past & future events related to the community. Members have presented their works around ALA tools in different meetings or conferences through posters, talks and even workshops. In this page, we also highlight the launch in production of data portals based on ALA.

Slack Channel

Developers from the entire community can discuss through a channel Slack hosted by Atlas of Living Australia. If you have any issue or any question related to the installation, development or maintenance of ALA modules, here is the place to go!

ALA Mailing List

Suscribe to the ALA-Portal mailing list in order to ask any technical or non technical question to the community.

Documentation & Links

Internationalization

Some ALA modules have been translated in several languages using the Crowdin platform. Translation has been made in Spanish, Catalan, Basque, French and Portuguese. You can access the project through the ALA Crowdin project

ALA Key Technical Document

This document is a contribution from the Encounter Bay (ALA node portal internationalization) project, co-funded by the French, Spanish, Portuguese and Belgian GBIF Nodes and GBIF Secretariat through its Capacity Enhancement Support Programme.

It is intended to capture the essence of the technical documentation about ALA components necessary for evaluators/adopters to discover, assess, understand, install, configure, customize and operate the tools.

Version: English, French, Portugese, Spanish.

Presentations

For each event, we try as much as possible to give access to all materials made by the members about the community or ALA's platform (talks, posters, videos): more information

Registry component

Atlas of Living Australia's module named "Collectory" is the registry component of the framework.
Through the administration tool, you will be able to publish datasets via the GBIF IPT, GBIF API or by directly publishing your DarwinCore Archive on your installation.
You will also be able to fill in metadata linked to institutions, collections, contacts, etc.
You will also have some public pages for each institution, collection or dataset you publish on your platform. There is also a search engine dedicated to datasets and another one to collections.

Link: Github folder

Biocache-store

This is the biocache-backend. It manages the loading, sampling, processing and indexing of occurrence records into the system.

Link: Github folder.

Occurrence search engine

Generic-hub is the occurrence record search engine of the ALA platform using JSON data format. It is a web UI using Grails framework for a backend service called biocache-service.

Link: Github folder.

Spatial portal

The Spatial Portal focuses on where a chosen species was located, what species were found in a defined area and what are the environmental conditions in that area.
The spatial portal is divided in four different web applications: spatial portal UI (web portal), spatial analysis service, spatial layers service and spatial actions. They use web services to communicate with each other when necessary.

Link: Github folders.

BIE

BIE system is divided in two parts: BIE-inde and Generic-BIE.
The first one is a Grails web application that indexes taxonomic content in DwC-A and provides search web-service.
The second one is a front-end interface providing species pages and a search engine.

Link: Github folders.

ALA4R

ALA4R module allows the R community to access data and resources hosted on the platform. The goal is to enable outputs (e.g., observations of species) to be queried and output in standard formats.

Link: Github folder.

Participants

Living Atlases

Institution Country Language Status
Atlas of Living Australia Australia English Live
Biodiversity Atlas Austria Austria German Live
Canadensys Canada English & French Live
Consejo Nacional de Áreas Protegidas (CONAP) Guatemala Spanish Live
CRBio Costa Rica Spanish & English Live
eElurikkus Estonia Estonian & English Live
GBIF Andorra Andorra Catalan Live
GBIF Benin Benin French Live
GBIF France France Live
GBIF Spain Spain Spanish Live
GBIF Sweden Sweden English & Swedish Live
GBIF Portugal Portugal Portugese Live
Instituto Chico Mendes de Conservaçao de Biodiversidad Brazil Portugese Live
Living Atlas of Barbados Barbados English Live
Living Atlas of the Caribbean English Live
Living Atlas of Suriname Suriname English Live
Living Atlas of Trinidad & Tobago Trinidad & Tobago English Live
NBN Atlas United Kingdom English Live
NBN Atlas Northern Ireland Northern Ireland English Live
NBN Atlas Scotland Scotland English Live
NBN Atlas Wales Wales English Live
NBN Atlas Isle of Man Isle of Man English Live
Sistema de Informação Sobre a Biodiversidade Brasileira (SiBBr) Brazil Portuguese & English Live
Sistema Nacional de Datos Biologicos Argentina Spanish Live
Atlas of Living Tanzania Tanzania Under development
The Field Museum USA English Under development
GBIF Luxemburg Luxemburg English, German & French Under development
GBIF Togo Togo French Under development
Requêteur national des données biodiversité (MTES/AFB/UMS PatriNat) France French Under development
Vermont Center for Ecostudies USA English Under development
GBIF Chile Chile In discussion
GBIF Norway Norway In discussion
The Habitat Foundation Ukraine In discussion
Philippines Atlas of Biodiversity(PhAB) Philippines In discussion
TaiBIF In discussion

The community in action...

Contact

Want to have more information about the community?

You can register to the ALA community mailing list.

[Tip for developers] We have a Slack channel where you can access and ask any question related to the Atlas of Living Australia platform and how to install it

The Living Atlases community